Super Smack is a benchmarking, stress testing, and load generation tool
for MySQL (and PostgreSQL). Super Smack was originally written by Sasha
Pachev, and then hosted and maintained by Jeremy Zawodny.
Version 2 of the FASTA packages contains many programs for performing
sequence comparisons, producing local alignments, and other related tasks
for analysing DNA and proteins.
Currently, the FASTA2 suite is in maintenance mode. This package provides
the analysis tools from FASTA2. The searching programs are available in
version 3 of the FASTA packages, which may be found in the port
biology/fasta3.
FASTA is described in: W. R. Pearson and D. J. Lipman (1988), "Improved
Tools for Biological Sequence Analysis", PNAS 85:2444- 2448, and W. R.
Pearson (1990) "Rapid and Sensitive Sequence Comparison with FASTP and FASTA"
Methods in Enzymology 183:63- 98).
The FASTA2 suite is distributed freely subject to the condition that it may
not be sold or incorporated into a commercial product.
makeztxt is a simple command line program that takes a plain ASCII text file
and compresses it into a zTXT database. makeztxt will remove newline
characters at the end of lines that contain text so that the paragraphs flow
better on the Palm screen.
This script uses the existing ports infrastructure to track dependencies,
and keep them up to date. It is written in /bin/sh so it has no dependencies.
Portmaster has the following features:
* Updates and repairs (as needed) entries for dependencies in both +CONTENTS
and +REQUIRED_BY files for both the port that is being updated, and any
ports that depend on it
* Runs make config recursively through all ports before starting build
* Downloads distfiles in the background
* Recursively checks and upgrades (or installs) all dependencies
* User can force upgrades of all dependent ports
* Offers the user the opportunity to delete stale distfiles
* Supports ports/MOVED and non-default settings of PORTSDIR and PKG_DBDIR
* Interactive update mode (prompts for each update)
* Option to rebuild port, and ports that depend on it
* Options to make packages out of installed, and new ports
* Option to clean out stale port dependencies
* Options to list installed ports by category, and those with new versions
* Packages can be used for installation either exclusively, if available,
or only for build dependencies
MD5 sums (see RFC 1321 - The MD5 Message-Digest Algorithm) are used as a
one-way hash of data. Due to the nature of the formula used, it is impossible
to reverse it.
This module provides functions to search several online MD5 hashes database and
return the results (or return undefined if no match found).
This add-on module allows the apache web server to use a PostgreSQL
database for user and/or group authentication. For large user lists this
can offer a significate speed up over apache's standard flat file
format.
Fast indexing and retrieval of FASTA records from flat file data bases.
This port installs diphone databases (voices) for the MBROLA speech
synthesizer.
Horde library for parsing timezone databases and generating
VTIMEZONE iCalendar components.
Libkpass is a from-scratch C implementation of reading and writing
KeePass 1.x format password databases.