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An online resource for standardized testing and long-term warehousing of interatomic models and data. This includes the development of application programming interface (API) standards for coupling atomistic simulation codes and interatomic potential subroutines.

Web viewer plugin allows easy serial view of medical images stored in Orthanc server in a browser, using HTML5 technology. Demo: http://youtu.be/ub5IxlVqoOE The plugin can't be used for diagnostic purposes.

The plugin replaces the default SQLite engine of Orthanc with a PostgreSQL back-end.

ObsPy is an open-source project dedicated to provide a Python framework for processing seismological data. It provides parsers for common file formats, clients to access data centers and seismological signal processing routines which allow the manipulation of seismological time series (see Beyreuther et al. 2010, Megies et al. 2011). The goal of the ObsPy project is to facilitate rapid application development for seismology.

Silo is a library for reading and writing a wide variety of scientific data to binary, disk files. The files Silo produces and the data within them can be easily shared and exchanged between wholly independently developed applications running on disparate computing platforms. Consequently, Silo facilitates the development of general purpose tools for processing scientific data.

This module implements a perl interface to Thorsten Joachims' SVMLight package: SVMLight is an implementation of Vapnik's Support Vector Machine [Vapnik, 1995] for the problem of pattern recognition, for the problem of regression, and for the problem of learning a ranking function. The optimization algorithms used in SVMlight are described in [Joachims, 2002a ]. [Joachims, 1999a]. The algorithm has scalable memory requirements and can handle problems with many thousands of support vectors efficiently. -- http://svmlight.joachims.org/

Perl module which generates a three-dimensional molecular structure from a connection table, such as that obtained by a 2D representation of the molecule or from a SMILES string.

Chemistry::Elements provides an easy, object-oriented way to keep track of your chemical data. Using either the atomic number, chemical symbol, or element name you can construct an Element object. Seamus Venasse <svenasse@polaris.ca>

Perl module which provides functions for detecting the bonds in a molecule from its 3D coordinates by using simple cutoffs, and for guessing the formal bond orders.

Perl module which provides functions for "canonicalizing" a molecular structure; that is, to number the atoms in a unique way regardless of the input order.