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xclip is a command line utility that is designed to run on any system with an X11 implementation. It provides an interface to X selections ("the clipboard") from the command line. It can read data from standard in or a file and place it in an X selection for pasting into other X applications. xclip can also print an X selection to standard out, which can then be redirected to a file or another program. FEATURES ======== * Reads data piped to standard in or files given as arguments * Prints contents of selection to standard out * Accesses the XA_PRIMARY, XA_SECONDARY or XA_CLIPBOARD selection * Supports the INCR mechanism for large transfers * Connects to the X display in $DISPLAY, or specified with -display host:0 * Waits for selection requests in the background

This utility can be used to test performance of storage devices. First, one need to generate file with I/O operations: # set mediasize=`diskinfo /dev/<device> | awk '{print $3}'` # set sectorsize=`diskinfo /dev/<device> | awk '{print $2}'` # raidtest genfile -s $mediasize -S $sectorsize -n 50000 It will generate test which contains 50000 I/O requests with random size and random offset. Size is a multiple of sectorsize, but less than or equal to 128kB (maxium size of I/O request). I/O request type (READ or WRITE) is random as well. All test data are stored in 'raidtest.data' file in current working directory. To run test, one should type: # raidtest test -d /dev/<device> -n 10 This command will read test data from 'raidtest.data' file, run 10 processes which will be used to send requests to the given device in parallel. When test is finished you will see statistics: Bytes per second: <x> Requests per second: <y> If you compare performance of two storage devices, use the same data file! usage: raidtest genfile [-frw] <-s mediasize> [-S sectorsize] <-n nrequests> [file] raidtest test [-Rrw] <-d device> [-n processes] [file] where: -d device path to tested device -f if raidtest.data file or specified file already exists, remove it and create new one -n nrequests number of requests to generate -n processes number of processes to run -r generate/run only READ requests -R generate random data for write requests -s size of destination device -S sector size of destination device -w generate/run only WRITE requests file path to the data file instead of default 'raidtest.data'

Jalview is a multiple alignment editor written in Java. It is used widely in a variety of web pages (e.g. the EBI Clustalw server and the Pfam protein domain database) and is also available as a general purpose alignment editor. o Reads and writes alignments in a variety of formats o Gaps can be inserted/deleted using the mouse. o Group editing (insertion deletion of gaps in groups of sequences). o Removal of gapped columns. o Align sequences using Web Services (Clustal, Muscle...) o Amino acid conservation analysis similar to that of AMAS. o Alignment sorting options (by name, tree order, percent identity, group). o UPGMA and NJ trees calculated and drawn based on percent identity distances. o Sequence clustering using principal component analysis. o Removal of redundant sequences. o Smith Waterman pairwise alignment of selected sequences. o Web based secondary structure prediction programs (JNet). o User predefined or custom colour schemes to colour alignments or groups. o Sequence feature retrieval and display on the alignment. o Print your alignment with colours and annotations. o Output alignments as HTML pages, images (PNG) or postscript (EPS). If you use Jalview in your work, please quote this publication. Clamp, M., et al. (2004), The Jalview Java Alignment Editor. Bioinformatics, 12, 426-7

The EAGLE Layout Editor is an easy to use, yet powerful tool for designing printed circuit boards (PCBs). The name EAGLE is an acronym, which stands for Easily Applicable Graphical Layout Editor. The program consists of three main modules: o Layout Editor o Schematic Editor o Autorouter which are embedded in a single user interface. Therefore there is no need for converting netlists between schematics and layouts. This is a Light Freeware Edition. It has the following limitations: o The useable board area is limited to 100 x 80 mm (4 x 3.2 inches). o Only two signal layers can be used (Top and Bottom). o The schematic editor can only create one sheet. o Support is only available via email or through our forum (no fax or phone support). o Use is limited to non-profit applications or evaluation purposes. Apart from these limitations the EAGLE Light Edition can do anything the Professional Edition can do. You can even load, view and print drawings that exceed these limits!

Pidl is an IDL compiler written in Perl that aims to be somewhat compatible with the midl compiler. IDL stands for "Interface Definition Language". Pidl can generate stubs for DCE/RPC server code, DCE/RPC client code and ethereal dissectors for DCE/RPC traffic. IDL compilers like pidl take a description of an interface as their input and use it to generate C (though support for other languages may be added later) code that can use these interfaces, pretty print data sent using these interfaces, or even generate ethereal dissectors that can parse data sent over the wire by these interfaces. Pidl takes IDL files in the same format as is used by midl, converts it to a .pidl file (which contains pidl's internal representation of the interface) and can then generate whatever output you need. .pidl files should be used for debugging purposes only. Write your interface definitions in .idl format. The goal of pidl is to implement a IDL compiler that can be used while developing the RPC subsystem in Samba (for both marshalling/unmarshalling and debugging purposes).

Ifm (Interactive Fiction Mapper) is a language for keeping track of your progress through an Interactive Fiction game, and a program for producing various different sorts of output using it. You can record each room you visit and its relation to other rooms, the initial locations of useful items you find, and the tasks you need to perform in order to solve the game. The Ifm mapping commands are designed so that you can easily add to the map as you explore the game. You type in the rooms you visit and the directions you move in to reach other rooms, and Ifm calculates the position of each room in relation to the others. A map can consist of several independent sections, allowing you to divide up the map however you like. The Ifm task commands, if used, allow you to specify the order in which game-solving tasks must be done. The Ifm program can then calculate and print different styles of walkthrough for the game.

mess822 is a library for parsing Internet mail messages. The mess822 package contains several applications that work with qmail: * ofmipd rewrites messages from dumb clients. It supports a database of recognized senders and From lines, using cdb for fast lookups. * new-inject is an experimental new version of qmail-inject. It includes a flexible user-controlled hostname rewriting mechanism. * iftocc can be used in .qmail files. It checks whether a known address is listed in To or Cc. * 822header, 822field, 822date, and 822received extract various pieces of information from a mail message. * 822print converts a message into an easier-to-read format. mess822 supports the full complexity of RFC 822 address lists, including address groups, source routes, spaces around dots, etc. It also supports common RFC 822 extensions: backslashes in atoms, dots in phrases, addresses without host names, etc. It extracts each address as an easy-to-use string, with a separate string for the accompanying comment. mess822 converts RFC 822 dates into libtai's struct caltime format. It supports numeric time zones, the standard old-fashioned time zones, and many nonstandard time zones.