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The massXpert project aims at providing (bio)chemists with a software package allowing the following: * User-specific atom definitions and polymer chemistry definitions; * Powerful sequence editing with user-defined glyphs for each monomer and monomer chemical modification. Multi-region selections; * Polymer sequence chemical/enzymatic cleavage; * Intramolecular cross-linking, like disulfide bonds with total resolution of the peptides generated upon enzymatic cleavage; * Gas-phase fragmentation of oligomers; * Mass-to-charge ratio calculations with inline change of ionization agent; * Calculation of net electrical charge and of isoelectric point (even by taking into account monomer modifications if polymer is a protein); * Simulation of isotopic patterns for any chemical formula and z charge; * A number of plugins allow 1) translation of the sequence from one format to another (using a dictionary, like between the 1-letter code and the 3-letter code of proteins) 2) conversion of number format according to any localized number format 3) sort mass lists.

Digest::BubbleBabble takes a message digest (generated by either of the MD5 or SHA-1 message digest algorithms) and creates a fingerprint of that digest in "bubble babble" format. Bubble babble is a method of representing a message digest as a string of "real" words, to make the fingerprint easier to remember. The "words" are not necessarily real words, but they look more like words than a string of hex characters. Bubble babble fingerprinting is used by the SSH2 suite (and, consequently, by Net::SSH::Perl, the Perl SSH implementation) to display easy-to-remember key fingerprints. The key (a DSA or RSA key) is converted into a textual form, digested using Digest::SHA1, and run through bubblebabble to create the key fingerprint.

Tripwire is a tool that aids system administrators and users in monitoring a designated set of files for any changes. Used with system files on a regular (e.g., daily) basis, Tripwire can notify system administrators of corrupted or tampered files, so damage control measures can be taken in a timely manner. If "TRIPWIRE_FLOPPY" is set to "YES" in the environment or on the "make" command line, this port will write the tripwire database to a floppy disk, which should then be write-protected and used as a reference for future runs. The diskette should be formatted and present in the "A" drive before starting the "make install" step. Joe Greco <jgreco@ns.sol.net>

Tripwire is a tool that aids system administrators and users in monitoring a designated set of files for any changes. Used with system files on a regular (e.g., daily) basis, Tripwire can notify system administrators of corrupted or tampered files, so damage control measures can be taken in a timely manner. If "TRIPWIRE_FLOPPY" is set to "YES" in the environment or on the "make" command line, this port will write the tripwire database to a floppy disk, which should then be write-protected and used as a reference for future runs. The diskette should be formatted and present in the "A" drive before starting the "make install" step. Joe Greco <jgreco@ns.sol.net>

relaxconf contains a set of text menu based utilities for configuring RelaxBSD (a LiveCD system base on FreeBSD),they're also useful for FreeBSD user. relaxconf: The main menu, allow the following utilities. relaxsnddetect: Auto detects audio cards (if present) and loads appropriate modules. relaxmountdisk: Auto mount other file systems (such as ufs,msdosfs, ntfs,ext2fs). relax[u]mountusb: Auto mount/umount USB removable storage. relaxnetconf: Allow the user to setting network interface such as ppp(pppoe),ethernet interface. relaxxconf: Allow the user to generating an xorg.conf file for use with Xorg(also XFree86). relaxlangconf: Allow the user to appoint the locale language. - Only for LiveCD: relaxsavesetting: Allows user to save preferences in a compressed file. relaxloadsetting: Auto seek and load preference save file in a partition. relaxmediabackup: Backup your person data. relaxrestore: Restore your person data. relaxinstaller: Launch BSD/RelaxBSD Installer to install LiveCD. http://sourceforge.net/projects/relaxbsd

The String::Koremutake module converts to and from Koremutake Memorable Random Strings. The term "Memorable Random String" was thought up by Sean B. Palmer as a name for those strings like dopynl, glargen, glonknic, spoopwiddle, and kebble etc. that don't have any conventional sense, but can be used as random identifiers, especially in URIs to keep them persistent. See http://infomesh.net/2001/07/MeRS/ Koremutake is a MeRS algorithm which is used by Shorl (http://shorl.com/koremutake.php). As they explain: "It is, in plain language, a way to express any large number as a sequence of syllables. The general idea is that word-sounding pieces of information are a lot easier to remember than a sequence of digits."

TinyMCE is a platform independent web based Javascript HTML WYSIWYG editor control released as Open Source under LGPL by Moxiecode Systems AB. It has the ability to convert HTML TEXTAREA fields or other HTML elements to editor instances. TinyMCE is very easy to integrate into other Content Management Systems. TinyMCE Features: - Easy to integrate, takes only two lines of code. - Customizable through themes and plugins. - Customizable XHTML 1.0 output. Block invalid elements and force attributes. - International language support (Language packs) - Multiple browser support, Mozilla, MSIE, FireFox, Opera and Safari (experimental). - PHP/.NET/JSP/Coldfusion GZip compressor, Makes TinyMCE 75% smaller and a lot faster to load. - You can easily use AJAX to save and load content!

TinyMCE is a platform independent web based Javascript HTML WYSIWYG editor control released as Open Source under LGPL by Moxiecode Systems AB. It has the ability to convert HTML TEXTAREA fields or other HTML elements to editor instances. TinyMCE is very easy to integrate into other Content Management Systems. TinyMCE Features: - Easy to integrate, takes only two lines of code. - Customizable through themes and plugins. - Customizable XHTML 1.0 output. Block invalid elements and force attributes. - International language support (Language packs) - Multiple browser support, Mozilla, MSIE, FireFox, Opera and Safari (experimental). - PHP/.NET/JSP/Coldfusion GZip compressor, Makes TinyMCE 75% smaller and a lot faster to load. - You can easily use AJAX to save and load content!

This package contains the set of ukrainian fonts for X11 Release 6. Copyright (C) 1995 Victor Forsyuk <victor@gu.net> This set is based on so-called "Cronyx" font set, that was copyrighted by Cronyx Ltd.: Copyright (C) 1994-1995 Cronyx Ltd. Under no circumstances is the author responsible for the proper functioning of this software, nor does the author assume any responsibility for damages incurred with its use. This port also creates two aliases for each of the fonts -- for koi8-r encoding (koi8-u is a superset of koi8-r anyway) and for cronyx foundry. Some applications (gtk?) look for -cronyx-*- and/or *-koi8-r explicitly, but there is no reason why this fonts can not be used in those cases.

Cdparanoia is a Compact Disc Digital Audio (CDDA) Digital Audio Extraction (DAE) tool, commonly known on the net as a 'ripper'. The application is built on top of the Paranoia library, which is doing the real work (the Paranoia source is included in the cdparanoia source distribution). Cdparanoia reads audio from the CDROM directly as data, with no analog step between, and writes the data to a file or pipe in WAV, AIFC, or raw 16 bit linear PCM. Cdparanoia is a bit different than most other CDDA extraction tools. It contains few-to-no 'extra' features, concentrating only on the ripping process and knowing as much as possible about the hardware performing it. Cdparanoia will read correct, rock-solid audio data from inexpensive drives prone to misalignment, frame jitter, and loss of streaming during atomic reads. Cdparanoia will also read and repair data from CDs that have been damaged in some way. Cdparanoia is easy to use and administrate. It has no compile time configuration, happily autodetecting the CDROM, its type, its interface and other aspects of the ripping process at runtime. A single binary can serve the diverse hardware of the do-it-yourself computer laboratory from Hell.