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XMMS input plugin for playing 8bit Atari(TM) .sap audio files
Sapplug is a XMMS input plugin for playing 8bit Atari(TM) .sap (Slight Atari
Player) audio files.
GTK-based MP3 player
The Zinf audio player is a simple, but powerful audio player for Linux and
Win32. It supports MP3, Ogg/Vorbis, WAV and Audio CD playback, with a powerful
music browser, theme support and a download manager.
It is based on the FreeA*p audio player which was developed by EMusic. The
FreeA*p project was discontinued due to a trademark conflict and EMusic being
acquired by Vivendi.
XF86Audio multimedia-key support for XMMS
A plugin that enables XMMS to use the media-control keys on many
keyboards to control XMMS playback and volume.
Intel MPI Benchmark
The idea of IMB is to provide a concise set of elementary MPI
benchmark kernels. With one executable, all of the supported
benchmarks, or a subset specified by the command line, can be run.
The rules, such as time measurement (including a repetitive call
of the kernels for better clock synchronization), message lengths,
selection of communicators to run a particular benchmark (inside
the group of all started processes) are program parameters.
Measurement tool for available bandwidth estimation
pathChirp is a new active probing tool for estimating the available bandwidth
on a communication network path. Based on the concept of "self-induced
congestion", pathChirp features an exponential flight pattern of probes we
call a chirp. Packet chirps offer several significant advantages over current
probing schemes based on packet pairs or packet trains. By rapidly increasing
the probing rate within each chirp, pathChirp obtains a rich set of
information from which to dynamically estimate the available bandwidth.
CLI tools for Short-Reads FASTA/FASTQ files preprocessing
The FASTX-Toolkit is a collection of command line tools for Short-Reads
FASTA/FASTQ files preprocessing.
Bayesian inference of phylogeny
MrBayes is a program for the Bayesian estimation of phylogeny.
Bayesian inference of phylogeny is based upon a quantity called the
posterior probability distribution of trees, which is the probability of a
tree conditioned on the observations. The conditioning is accomplished
using Bayes's theorem. The posterior probability distribution of trees is
impossible to calculate analytically; instead, MrBayes uses a simulation
technique called Markov chain Monte Carlo (or MCMC) to approximate the
posterior probabilities of trees.
Efficient tools for large-scale multiple alignments of genomic DNA
The Lagan Tookit is a set of alignment programs for comparative
genomics. The three main components are a pairwise aligner (LAGAN), a
multiple aligner (M-LAGAN), and a glocal aligner (Shuffle-LAGAN). All
three are based on the CHAOS local alignment tool and combine speed
(regions up to several megabases can be aligned in minutes) with high
accuracy. The results of the alignment can be visualized using the VISTA
visualization tool.
Flexible read trimming tool for Illumina NGS data
Trimmomatic performs a variety of useful trimming tasks for illumina
NGS paired-end and single ended data.
Complete set of CAD tools and libraries for VLSI design
Alliance is a complete set of free CAD tools and portable libraries
for VLSI design. It includes a VHDL compiler and simulator, logic
synthesis tools, and automatic place and route tools. A complete set
of portable CMOS libraries is provided. Alliance is the result of a
twelve year effort spent at ASIM department of LIP6 laboratory of
the Pierre et Marie Curie University (Paris VI, France).