Zopkio is a test framework built to support at scale performance and
functional testing.
Randomio is a multithreaded disk i/o microbenchmark. It
requires O_DIRECT, pread/pwrite, and pthreads.
Web Polygraph is a benchmarking tool for Web proxies. Polygraph
distribution includes a high-performance client and server simulators.
The simulators create a stream of HTTP requests that can be routed through
a Web proxy. Studying proxy performance under various [stress] conditions is
essential for performance tuning, evaluation of new algorithms, analysis of
hardware configurations, and comparing available proxy products.
CD-HIT is a very widely used program for clustering and comparing protein or
nucleotide sequences.
Io_lib is a library of file reading and writing code to provide a
general purpose trace file (and Experiment File) reading interface.
The programmer simply calls the (eg) read_reading to create a "Read"
C structure with the data loaded into memory. It has been compiled
and tested on a variety of Unix systems, MacOS X and MS Windows.
p5-Bio-Graphics is a simple GD-based renderer (diagram drawer)
for DNA and protein sequences.
pyfasta is a python module for fast, memory-efficient, pythonic
access to fasta sequence files.
python-nexus is a generic nexus (phylogenetics) file format(.nex, .trees)
reader for python.
TkGate is a event driven digital circuit simulator with a tcl/tk-based
graphical editor. TkGate supports a wide range of primitive circuit elements as
well as user-defined modules for hierarchical design.
The distribution comes with a number of tutorial and example circuits.
Eterm is a color vt102 terminal emulator intended as a replacement for
xterm. It is designed with a Freedom of Choice philosophy, leaving as
much power, flexibility, and freedom as possible in the hands of the
user. It is designed to look good and work well, but takes a
feature-rich approach rather than one of minimalism while still
maintaining speed and efficiency.