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abcm2ps is a command line program which converts ABC to music sheet in PostScript format. It is an extension of abc2ps which may handle many voices per staff.

This port provides the PostScript Type 1 version of Adobe Utopia for use with GNU Troff, as it is configured in a FreeBSD basic install. For details on usage, invoke: man utopia_font.

lsknobs is a simple sh(1) script designed to help configure ports knobs and options by listing them together with their status (either enabled or not). It uses portconf for knobs.

pkg_rmleaves finds packages that are not required (depended on) by any other installed package and lets you decide (in a beautiful dialog interface) for each one if you want to keep it or deinstall it.

This program provides for an alternate pkg upgrade procedure. Move /usr/local to /usr/old-local and /var/db/pkg to /var/db/old-pkg, then use pkg-compare to generate a list of packages to install.

Redports is a fully hosted continuous integration platform for testing FreeBSD Ports. redports-node is running on each building machine which asks for new building jobs from the master and builds them using poudriere.

eco is a publicly available R package that implements the Bayesian and likelihood methods proposed in Imai, Lu, and Strauss (2008) for ecological inference in $2 \times 2$ tables as well as the method of bounds introduced by Duncan and Davis (1953).

Avogadro is an advanced molecular editor designed for cross-platform use in computational chemistry, molecular modeling, bioinformatics, materials science, and related areas. It offers flexible rendering and a powerful plugin architecture.

The massXpert project aims at providing (bio)chemists with a software package allowing the following: * User-specific atom definitions and polymer chemistry definitions; * Powerful sequence editing with user-defined glyphs for each monomer and monomer chemical modification. Multi-region selections; * Polymer sequence chemical/enzymatic cleavage; * Intramolecular cross-linking, like disulfide bonds with total resolution of the peptides generated upon enzymatic cleavage; * Gas-phase fragmentation of oligomers; * Mass-to-charge ratio calculations with inline change of ionization agent; * Calculation of net electrical charge and of isoelectric point (even by taking into account monomer modifications if polymer is a protein); * Simulation of isotopic patterns for any chemical formula and z charge; * A number of plugins allow 1) translation of the sequence from one format to another (using a dictionary, like between the 1-letter code and the 3-letter code of proteins) 2) conversion of number format according to any localized number format 3) sort mass lists.

Pupynere is a Python module for reading and writing NetCDF files, using the same API as Scientific.IO.NetCDF and pynetcdf. It depends only on Numpy, so you don't need to have the NetCDF library installed.