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This program provides for an alternate pkg upgrade procedure. Move /usr/local to /usr/old-local and /var/db/pkg to /var/db/old-pkg, then use pkg-compare to generate a list of packages to install.

Redports is a fully hosted continuous integration platform for testing FreeBSD Ports. redports-node is running on each building machine which asks for new building jobs from the master and builds them using poudriere.

eco is a publicly available R package that implements the Bayesian and likelihood methods proposed in Imai, Lu, and Strauss (2008) for ecological inference in $2 \times 2$ tables as well as the method of bounds introduced by Duncan and Davis (1953).

Avogadro is an advanced molecular editor designed for cross-platform use in computational chemistry, molecular modeling, bioinformatics, materials science, and related areas. It offers flexible rendering and a powerful plugin architecture.

Orthanc aims at providing a simple, yet powerful standalone DICOM server. It is designed to improve the DICOM flows in hospitals and to support research about the automated analysis of medical images. Orthanc can turn any computer running Windows, Linux, FreeBSD or OS X into a DICOM store (in other words, a mini-PACS system). Its architecture is lightweight and standalone, meaning that no complex database administration is required, nor the installation of third-party dependencies. What makes Orthanc unique is the fact that it provides a RESTful API. Thanks to this major feature, it is possible to drive Orthanc from any computer language. The DICOM tags of the stored medical images can be downloaded in the JSON file format. Furthermore, standard PNG images can be generated on-the-fly from the DICOM instances by Orthanc. Orthanc lets its users focus on the content of the DICOM files, hiding the complexity of the DICOM format and of the DICOM protocol.

linSmith is a Smith Charting program. You can enter either discrete components or transmission lines, see the results on screen and/or generate Postscript output. Component values can be changed numerically or using scrollbars.

The massXpert project aims at providing (bio)chemists with a software package allowing the following: * User-specific atom definitions and polymer chemistry definitions; * Powerful sequence editing with user-defined glyphs for each monomer and monomer chemical modification. Multi-region selections; * Polymer sequence chemical/enzymatic cleavage; * Intramolecular cross-linking, like disulfide bonds with total resolution of the peptides generated upon enzymatic cleavage; * Gas-phase fragmentation of oligomers; * Mass-to-charge ratio calculations with inline change of ionization agent; * Calculation of net electrical charge and of isoelectric point (even by taking into account monomer modifications if polymer is a protein); * Simulation of isotopic patterns for any chemical formula and z charge; * A number of plugins allow 1) translation of the sequence from one format to another (using a dictionary, like between the 1-letter code and the 3-letter code of proteins) 2) conversion of number format according to any localized number format 3) sort mass lists.

Web viewer plugin allows easy serial view of medical images stored in Orthanc server in a browser, using HTML5 technology. Demo: http://youtu.be/ub5IxlVqoOE The plugin can't be used for diagnostic purposes.

Pupynere is a Python module for reading and writing NetCDF files, using the same API as Scientific.IO.NetCDF and pynetcdf. It depends only on Numpy, so you don't need to have the NetCDF library installed.

Ws2300 manipulates the LaCrosse WS-2300 weather station via its RS232 interface. It can read and write values, and can continuously log data from WS-2300 to a file or SQL database.