This package implements the Sim4 algorithm for aligning expressed DNA
with genomic sequences, described in the paper:
L. Florea, G. Hartzell, Z. Zhang, G. Rubin, and W. Miller (1998)
"A computer program for aligning a cDNA sequence with a genomic DNA sequence."
Genome Research 8, 967-974.
Port maintained by the FreeBSD bio-porters mailing list.
Recombine fits a model which has a single population of constant size with a
single recombination rate across all sites. It can accomodate either plain
DNA or RNA data or SNP (single nucleotide polymorphism) data.
Recombine forms part of the Lamarc (Likelihood Analysis with Metropolis
Algorithm using Random Coalescence) suite. See:
http://evolution.genetics.washington.edu/lamarc.html
Fritzing is an Electronic Design Automation software with a low
entry barrier, suited for the needs of designers and artists. It
uses the metaphor of the breadboard, so that it is easy to transfer
your hardware sketch to the software. From there it is possible to
create PCB layouts for turning it into a robust PCB yourself or by
help of a manufacturer.
Qucs is an integrated circuit simulator which means you are able to
setup a circuit with a graphical user interface (GUI) and simulate the
large-signal, small-signal and noise behaviour of the circuit. After
that simulation has finished you can view the simulation results on a
presentation page or window.
Gnokii is a Unix/Linux tool suite for mobile phones. It provides a
library to communicate with a phone hiding the communication protocol.
The library handles SMS, phonebook, calendar, phone calls, and other
mobile phone capabilities. It supports most of the GSM phones: Nokia
ones using Nokia proprietary protocol and AT-capable ones -- using
standard AT commands.
HCIdump reads raw HCI data coming from and going to a Bluetooth device and
prints commands, events, and data in a human-readable form.
Optionally, the dump can be written to a file rather than parsed, so that
dump file can be parsed later.
Nokryptia is a program to convert music files like MP3 to work on a Nokia 5510
cell phone. The utility also does not do any encryption, it uses in fact a bug
in the encryption algorithm. Therefore, no actual encryption is done, which
makes the program very fast in comparison to the official software from Nokia.
The Yagi-Uda project is a set of programmes for designing, and optimising
Yagi-Uda antennas, with 2 or more elements, such as shown below. Additionally,
a very simple program called dipole works with just a dipole, but its
functionality is limited.
Written by Dr. David Kirkby, G8WRB. email david.kirkby@onetel.net
JSON (JavaScript Object Notation) is a lightweight data-interchange format.
It is easy for humans to read and write. It is easy for machines to parse
and generate. It is based on a subset of the JavaScript Programming
Language, Standard ECMA-262 3rd Edition - December 1999. This library
provides a parser and pretty printer for converting between Haskell values
and JSON.
The GNU dbm is a library of database functions that use extensible hashing
and works similar to the standard UNIX dbm functions. These routines are
provided to a programmer needing to create and manipulate a hashed database.
This library exists in the FreeBSD base collection, but the GNU version has
added functionality that is sometimes useful.