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Pocket Sphinx is a frontend to the sphinxbase large-vocabulary, speaker-independent, continuous speech recognition engine. This is an early release of a research system. The APIs and function names are likely to change, and several tools still need to be made available to make this all complete. Once the system is built, try running the Perl script sphinx2-demo. The pocketsphinx-test script should run pocketsphinx-batch over an example utterance of "go forward ten meters."

QUIMUP is a 'graphical' client for the music player daemon (MPD) written in C++ and Qt5. Features include: * Support for (locally stored) albumart. * Support for audio streams (url). * Drag & drop playlist management. * Database browser (artist, album, genre, folder & playlist mode) * Database search (artist, album, genre & title mode). * Quick search-and-select in the playlist. * Mini-mode interface for basic control only. * Open folder in external programs to edit tags etc. * Generally a quick and clean application.

Sphinx 2 is a large-vocabulary, speaker-independent, continuous speech recognition engine. This is an early release of a research system. The APIs and function names are likely to change, and several tools still need to be made available to make this all complete. Once the system is built, try running the Perl script sphinx2-demo. The sphinx2-test script should run sphinx2-batch over an example utterance of "go forward ten meters." Trevor Johnson

WMalbum is a dock applet that displays album covers for songs being played by XMMS. You must already have images of the album covers stored near the file being played. WMAlbum provides a handy circular menu for play/skip/etc, and can replace wmxmms. Although dock applets are designed for the WindowMaker window manager, they also work in other window managers including openbox and blackbox.

PostMark is the benchmark used in the NetApp Technical Report TR-3022, "PostMark: A New File System Benchmark". The paper fully explains how to use this tool. From the paper's Abstract: Existing file system benchmarks are deficient in portraying performance in the ephemeral small-file regime used by Internet software, especially: * electronic mail * netnews * web-based commerce PostMark is a new benchmark to measure performance for this class of application.

fastDNAml is a program derived from Joseph Felsenstein's version 3.3 DNAML (part of his PHYLIP package). Users should consult the documentation for DNAML before using this program. fastDNAml is an attempt to solve the same problem as DNAML, but to do so faster and using less memory, so that larger trees and/or more bootstrap replicates become tractable. Much of fastDNAml is merely a recoding of the PHYLIP 3.3 DNAML program from PASCAL to C.

Bio::ASN1::EntrezGene is a regular expression-based Perl Parser for NCBI Entrez Gene genome databases [1]. It parses an ASN.1-formatted Entrez Gene record and returns a data structure that contains all data items from the gene record. [1] http://www.ncbi.nih.gov/entrez/query.fcgi?db=gene The parser will report error & line number if input data does not conform to the NCBI Entrez Gene genome annotation file format.

p5-Bio-MAGETAB contains the core MAGE-TAB Utilities Perl modules. This is a beta release. All functions have now been implemented and most have test suites; the exceptions include the modules involved in export of MAGE-TAB documents, which are still a little experimental in nature. The API is mostly finalised (and fully documented), but some details may yet change where necessary to improve usability.

The Bioperl Project is an international association of developers of open source Perl tools for bioinformatics, genomics and life science research. Bioperl is a collection of object-oriented Perl modules created by the Bioperl Project. It forms the basis of a large number of bioinformatics and genomics applications. (For an interesting aside on "How Perl saved the Human Genome Project", see http://www.bioperl.org/wiki/How_Perl_saved_human_genome)

PyCogent is a software library for genomic biology. It is a fully integrated and thoroughly tested framework for: controlling third-party applications; devising workflows; querying databases; conducting novel probabilistic analyses of biological sequence evolution; and generating publication quality graphics. It is distinguished by many unique built-in capabilities (such as true codon alignment) and the frequent addition of entirely new methods for the analysis of genomic data.