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MINC (Medical Imaging NetCDF) is a medical imaging data format and an associated set of tools and libraries.

Perl module which provides functions for detecting the bonds in a molecule from its 3D coordinates by using simple cutoffs, and for guessing the formal bond orders.

Perl module which will parse a SMARTS (SMiles ARbitrary Target Specification) string, generating a Chemistry::Pattern object. It is a file I/O driver for the PerlMol toolkit.

MOPAC 6 input file reader/writer

SLN linear notation parser/writer

Perl module which will parse a SMARTS (SMiles ARbitrary Target Specification) string, generating a Chemistry::Pattern object. It is a file I/O driver for the PerlMol toolkit.

Perl module which parses a SMILES (Simplified Molecular Input Line Entry Specification) string.

Generate VRML models for molecules

XYZ molecule format reader/writer

FastHenry computes the frequency dependent self and mutual inductances and resistances between conductors of complex shape. The algorithm used in FastHenry is an acceleration of rge mesh formulation approach. The linear system resulting from the mesh formulation is solved using a generalized minimal residual algorithm with a fast multipole algorithm to efficiently compute the iterates. --------------------- Superconductivity Support ------------------------- This version of fasthenry has been modified to support superconducting segments and ground planes by Stephen R. Whiteley of Whitleley Research Inc. The analysis used is based on the London equations and the two-fluid model. Both reactive and lossy components of the superconductor complex conductivity are employed in obtaining the impedance matrix.