Chemistry-MacroMol is a toolkit includes basic objects and methods to
describe macromolecules, a macromolecule is just a molecule that
consists of several "domains". For example, a protein consists
of aminoacid residues, or a nucleic acid consists of bases. Therefore
Chemistry::MacroMol is derived from Chemistry::Mol, with additional
methods to handle the domains.
Select atoms in macromolecule
Perl molecular awk interpreter
Paje is a graphical tool that displays traces produced during the
execution of multithreaded programs. Other programs can also generate
traces for this tool.
Key Features
* Supports multi threaded programs
- each thread of the analysed program can be individually displayed,
or multiple threads can be combined, to reduce screen space usage.
* Interactivity
- each entity represented on the screen can be interrogated for
more information,
- related entities are highlighted as mouse cursor passes over
some representation
LICENSE: LGPL2 or later
Perl module which implements basic pattern matching for molecules.
Explicit chemical reactions
Perl module which provides some basic methods for representing a ring.
Geo::ReadGRIB is an object Perl module that provides read
access to data distributed in GRIB files. Specifically,
it is wrote to access NOAA Wavewatch III marine weather
model forecasts which are packaged as GRIB.
Perl modules for molecular chemistry
Objects of class Physics::Unit define units of measurement that correspond
to physical quantities. This module allows you to manipulate these units,
generate new derived units from other units, and convert from one unit
to another.