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Audacity is a program that lets you manipulate digital audio waveforms. In addition to letting you record sounds directly from within the program, it imports many sound file formats, including WAV, AIFF, AU, IRCAM, MP3, and Ogg Vorbis. It supports all common editing operations such as Cut, Copy, and Paste, plus it will mix tracks and let you apply plug-in effects to any part of a sound. It also has a built-in amplitude envelope editor, a customizable spectrogram mode and a frequency analysis window for audio analysis applications.

Snd is a sound editor modeled loosely after Emacs and an old, sorely-missed PDP-10 sound editor named Dpysnd. It can accommodate any number of sounds, each with any number of channels, and can be customized and extended using Guile, Ruby or Forth. Included with it are some command-line utilities: - snd-info (note: renamed from sndinfo, for this FreeBSD port) prints a description of a sound file. - sndplay plays a sound file. - sndrecord records sound from a microphone. - audinfo describes the current state of the audio hardware.

Xmcd is a program that allows the use of the CD-ROM drive as a full-featured stereo compact-disc player for the X Window System. Most of the features found on real CD players are available in xmcd, such as shuffle and repeat, track programming functions, a numeric keypad, and track warp slider for direct track access. Additional functions include sample play, A to B segment play, volume control, balance control, etc. Several automation options are also available on CD load, eject, play completion, and program exit. A Channel Routing feature allows you to select from several stereo or mono routing options. The volume control slider taper characteristics can also be altered.

From the website: T-Coffee is a multiple sequence alignment package. Given a set of sequences (Proteins or DNA), T-Coffee generates a multiple sequence alignment. Related publications: - 3DCoffee: Combining Protein Sequences and Structures within Multiple Sequence Alignments. O. O'Sullivan, K Suhre, C. Abergel, D.G. Higgins, C. Notredame. Journal of Molecular Biology, Vol 340, pp385-395, 2004 - T-Coffee: A novel method for multiple sequence alignments. C.Notredame, D. Higgins, J. Heringa, Journal of Molecular Biology,Vol 302, pp205-217,2000 - COFFEE: A New Objective Function For Multiple Sequence Alignmnent. C. Notredame, L. Holme and D.G. Higgins,Bioinformatics,Vol 14 (5) 407-422,1998

"Wise2 is package that is focused on comparing DNA sequences at the level of its conceptual translation, regardless of sequencing error and introns. This really is a rewrite of the old wisetools package, which I wrote about 3 years ago. It can compare a single protein or a profile HMM to a genomic DNA sequence, and predict a gene structure. This is algorithm, called genewise, is one of the algorithms available in Wise2. There are other algorithms focused on EST data rather than genomic data, as well as some other algorithm curios." - from the web site (Ewan Birney)

QuickPage sends messages to a paging terminal using the SNPP and IXO (also known as TAP) protocols. It is normally used with no options other than a recipient and the message text, in which case the message is sent to the SNPP server where it is submitted to a page queue to be sent by a separate daemon process. Page groups and duty schedules are supported. Status notification messages indicating the success or failure of a page are sent via e-mail to submitters of high-priority (level 0) pages.

UIRD is software to control your PC via a normal remote control. It is designed to interface with the UIRR (Universal IR Receiver), which is a piece of hardware that you can easily build yourself. Features: * Embedded perl-interpreter for advanced scripting features * Learning mode - interactively press a button on your remote and then enter what should happpen every time you push that button * Simple configuration-file for specifying what should happen when you push a particular button * Network mode sends IR-data encapsulated in UDP-packets over the network to a remote host

JSON::Tiny is a standalone adaptation of Mojo::JSON, from the Mojolicious framework. It has been adapted as a single-source-file module of under 350 lines of code and core-only dependencies. Key features include relaxed JSON handling, transparent Unicode support, speed, small memory footprint, and a minimal code base ideal for bundling or inlining. Mojo::JSON was chosen as a model because it is robust, minimal, and well tested. Mojo::JSON's tests were also adapted to a design free of non-core dependencies.

Libodbc++ aims to be a complete C++ development environment for data source (typically SQL database) access. It exists in the form of a class library and a set of tools. Libodbc++ currently provides a subset of the JDBC 2.0 specification functionality. Libodbc++ runs on top of ODBC, i.e. it needs to be compiled with support for an ODBC driver manager. It currently supports either iODBC or unixODBC. This port allows the user to select which driver manager to use via a build-time variable definition - see the comments in the Makefile for further details.

mtop (MySQL top) monitors a MySQL server showing the queries which are taking the most amount of time to complete. Features include 'zooming' in on a process to show the complete query, 'explaining' the query optimizer information for a query and 'killing' queries. In addition, server performance statistics, configuration information, and tuning tips are provided. mkill (MySQL kill) monitors a MySQL server for long running queries and kills them after a specified time interval. Queries can be selected based on regexes on the user, host, command, database, state and query.